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See full list on datingnews.com ChIA-PET2 is a versatile and flexible pipeline for analysing different variants of ChIA-PET data from raw sequencing reads to chromatin loops.

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Sushi. Tools for visualizing genomics data. Citation. Sushi.r: Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures.

Run cLoops -h to see all options. Key parameters are eps and minPts.minPts defines at least how many PETs are required for a candidate loop, eps defines the distance requried for two PETs being neighbors. For practically usage to tune parameters, using the PETs in the smallest chromosome except chrY and chrM, then run a series of eps and minPts,all …

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